Produced by Bob Lessick in the Center for Biotechnology Education. nucleotide and protein sequence comparison (Selzer, Marhofer and Rohwer 2008).

Exercise: mapping other database identifiers to UniProtĪll materials are free cultural works licensed under a Creative Commons Attribution-ShareAlike 4.0 International license, except where further licensing details are provided. An exercise on how to produce multiple sequence alignments for a group of related proteins.

Exercise: finding entries with 3D structures align the sequences automatically or do a manual alignment, perhaps with assistance from programs such as BioEdit and GeneDoc.

I need to edit my alignment recently, and install it in my iMac using Wine, which is a compatibility layer for running Windows applications on POSIX-compliant OS. For some of them, BioEdit is the only reason to install Parallels Desktop. Most of my labmates run this software using Parallels Desktop.

Accessing UniProt data programmatically To my knowledge, BioEdit is the most comprehensive biological sequence alignment editor.

Repeat the comparisons above only this time, using Sequence 2 as the comparison sequence (e.g.

This will highlight this sequence and make it the master sequence.

Converting UniProt identifiers to external identifers (or vice versa) Hold down CTRL while Right Clicking on Sequence 2 (the Pan sequence) on the left hand side of the window.

How to master sequence bioedit